Vitis vinifera Genome - IGA
Project
|
GBrowse
|
Contacts
|
Blast
Vitis vinifera
Overview
The Vitis vinifera genome sequence analysis results from a collaboration between different contributors: the
Istituto di Genomica Applicata
(IGA, Institute of Applied Genomics),
Genoscope
,
INRA
and a consortium of Italian groups. The 12x coverage assembly was done by IGA, Genoscope and the University of Verona. The gene predictions were performed using the
GAZE
computational framework.
This project was financed by the French Ministry of Higher Education and Research, the
Consortium National de Recherche en Génomique
, the
Agence Nationale de la Recherche
, INRA, the Italian Ministry of Agriculture (VIGNA-CRA), and Regione Autonoma Friuli Venezia Giulia together with a consortium of private companies and banks (IGA).
One more disclaimer - this represents the second version of the assembled genome. We hope that this release represents a good approximations of PN40024 genome. If you believe that you have identified a discrepancy or an error in the data, please contact us at
gbrowse@appliedgenomics.org
and we will be sure to address your concerns in an upcoming release.
Statistics
Assembly
Number
N50 Length (kb)
Coverage of the genome
Supercontigs
2,059
3,426
100%
Mapped ultracontigs
33
23,006
91.2%
Annotation
Annotated genes
26,346
Annotated transcripts
26,346
Average number of coding exons per gene
5.95
Median gene size (bp)
3,572
Average CDS size (bp)
1,137
Median exon size (bp)
122
Chromosomes sizes
#
Size (bp)
Size preview
1
23,037,639
2
18,779,844
3
19,341,862
4
23,867,706
5
25,021,643
6
21,508,407
7
21,026,613
8
22,385,789
9
23,006,712
10
18,140,952
11
19,818,926
12
22,702,307
13
24,396,255
14
30,274,277
15
20,304,914
16
22,053,297
17
17,126,926
18
29,360,087
19
24,021,853