Peach Genome


	Peach Genome v1.0

Tracks in the Genome Browser

The Peach Genome Browser hosts tracks classified in different sections. Each section is exaplained below.
Linked tracks provide the corresponding source file in GFF3 format.

EST Alignments	Aligments were divided in two tracks: PASA aligned EST: ESTs aligned with PASA blat Prunus persica EST assembly: assembly of aligned ESTs
RNA-seq Illumina profiles	Transcriptome profiling using illumina deep-sequencing. For each sequenced tissue only unique alignments or all alignments (with multiple hit counts partitioned over hit positions) are plotted. Plots use a log 10 scale. In addition, gapped alignment was run over predictions to confirm exon-exon junctions. Tissues sequenced: Cotyleydon+Embryo Fruit Leaf Root
Repetitive sequences	Set of tracks related to repetitive sequences: LTR Finder (LTR based repeats detected with LTR Finder) RepBase (masking versus repeats in RepBase) ReAS (Repeats predictions with ReAS) Repetitive elements in Prunus persica v1.0, cultivar Lovell SSR (microsatellites computed with Sputnik)
K-mers	Genome (exact) 20-mers profile

Genome

Besides the tracks is possibile to download the Peach Genome v1.0 (FASTA).
It is also possible to download:

Peach gene CDS sequences ( FASTA )
Predicted gene peptides ( FASTA )
Predicted gene transcripts ( FASTA )
Prunus Map Markers with GBrowse hyperlink ( xls )

Genome Browser

Our genome browser is available at http://services.appliedgenomics.org/gbrowse/prunus_public/ .

Tracks in the Genome Browser

EST Alignments

RNA-seq Illumina profiles

Repetitive sequences

K-mers

Genome

Genome Browser