The Peach Genome Browser hosts tracks classified in different sections. Each section is exaplained below.
Linked tracks provide the corresponding source file in GFF3 format.
Aligments were divided in two tracks:
RNA-seq Illumina profiles
Transcriptome profiling using illumina deep-sequencing.
For each sequenced tissue only unique alignments or all alignments (with multiple hit counts partitioned over hit positions) are plotted. Plots use a log 10 scale.
In addition, gapped alignment was run over predictions to confirm exon-exon junctions.
Set of tracks related to repetitive sequences:
SSR (microsatellites computed with Sputnik)
Genome (exact) 20-mers profile
Besides the tracks is possibile to download the Peach Genome v1.0 (FASTA).
It is also possible to download:
Our genome browser is available at http://services.appliedgenomics.org/gbrowse/prunus_public/ .