Prunus persica v1.0 Istituto di Genomica Applicata | Project informations | Tracks description | Blast

Prunus persica Public

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Examples: scaffold_1, scaffold_2, scaffold_3, scaffold_4, scaffold_5, scaffold_6, scaffold_7, scaffold_8.
Data Source Prunus persica Public

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 Tracks

 Tracks

 Alignments

 Alignments

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blat Prunus persica EST assembly

PASA aligned ESTs

 General

 General

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DNA/GC Content	3-frame translation (forward)
6-frame translation	3-frame translation (reverse)

 Genes

 Genes

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Alternative transcript

Transcript

 Markers

 Markers

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Genetic Marker

 RNA-seq Illumina

 RNA-seq Illumina

 Confirmed exon-exon junctions

 Confirmed exon-exon junctions

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Cotyledon+Embryo	Leaf
Fruit	Root

 Profiles (log 10 scale)

 Profiles (log 10 scale)

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Cotyledon+Embryo, unique alignments	Fruit, all alignments	Root, unique alignments
Cotyledon+Embryo, all alignments	Leaf, unique alignments	Root, all alignments
Fruit, unique alignments	Leaf, all alignments

 Repetitive sequences

 Repetitive sequences

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Lovell repeats	Repeats prediction (ReAS)	SSR
LTR Finder	RepBase

 K-mers

 K-mers

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20mers with 0 errors

 Analysis

 Analysis

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Restriction Sites

Custom Tracks

[Help with uploading custom tracks]

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